OnkoSight AdvancedTM Pan-Heme Fusion Panel

Gene fusions have become increasingly important as diagnostic and therapeutic targets in cancer. Fusions are a type of somatic alteration leading to cancer associated with up to 20% of cancer morbidity.

Fusions arise due to genomic rearrangements that include chromosomal inversion, interstitial deletions, duplications, and translocations. Conventional methodologies such as chromosome analysis, fluorescence in situ hybridization (FISH), and RT-PCR have been used to detect gene rearrangements, but these procedures have limitations. For example, t(12;21)(p13;q22) with ETV6-RUNX1 is often missed in the analysis of chromosomes. Moreover, translocations that involve KMT2A (MLL), which has >100 partner genes with numerous different breakpoints, are not fully covered by the limited number of primer sets used in RT-PCR.

Clinical Utility of Gene Fusions in Hematology

  • Diagnosis and classification of various myeloid and lymphoid neoplasms
  • Subgrouping and prognostication in leukemia
  • Modification of treatment intensity or early stem cell transplantation (i.e., KMT2A and BCR-ABL1 translocations)
  • Eligibility to targeted molecular drugs (e.g., tyrosine kinase inhibitors)
  • Identification of potential clinical trial eligibility

Test Information

TP02-2

ABL1
 ABL2
 ALK
 BCL11B
 BCL2
 BCL6
 BCR
 BIRC3
 CBFB
 CCND1
 CCND3
 CDK6
 CHD1
 CHIC2
 CIITA
 CREBBP
 CRLF2
 CSF1R
 DEK
 DUSP22
 EBF1
 EIF4A1
 EPOR
 ERG
 ETV6
 FGFR1
 GUS2
 IKZF1
 IKZF2
 IKZF3
 JAK2
 KAT6A
 KLF2
 KMT2A
 MALT1
 MECOM
 MKL1
 MLF1
 MLLT10
 MLLT4
 MYC
 MYH11
 NF1
 NFKB2
 NOTCH1
 NTRK3
 NUP214
 NUP98
 P2RY8
 PAG1
 PAX5
 PBX1
 PDCD1L G2
 PDGFRA
 PDGFRB
 PICALM
 PML
 PRDM16
 PTK2B
 RARA
 RBM15
 ROS1
 RUNX1
 RUNX1T1
 SEMA6A
 SETD2
 STIL
 TAL1
 TCF3
 TFG
 TP63
 TYK2
 ZCCHC7

GenPath® also offers single-gene testing. Healthcare providers should only order panels if each test in the panel is medically necessary.

Download a sample report here.

References:

1. Nikanjam M, Okamura R, Barkauskas DA, Kurzrock R. Targeting fusions for improved outcomes in oncology treatment. Cancer. 2020 Mar 15;126(6):1315-1321. doi: 10.1002/cncr.32649. Epub 2019 Dec 3. PMID: 31794076; PMCID: PMC7050395.

2. Foltz SM, Gao Q, Yoon CJ, Sun H, Yao L, Li Y, Jayasinghe RG, Cao S, King J, Kohnen DR, Fiala MA, Ding L, Vij R. Evolution and structure of clinically relevant gene fusions in multiple myeloma. Nat Commun. 2020 May 29;11(1):2666. doi: 10.1038/s41467-020-16434-y. PMID: 32471990; PMCID: PMC7260243.

3. Borahm Kim, Hyeonah Lee, Saeam Shin, Seung-Tae Lee, Jong Rak Choi, Clinical Evaluation of Massively Parallel RNA Sequencing for Detecting Recurrent Gene Fusions in Hematologic Malignancies, The Journal of Molecular Diagnostics, Volume 21, Issue 1, 2019.